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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_199217960_199222625_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
199217960 - 199222625
Intron Length:
4666

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGTTCT
5'SS Class:
strong_major
3'SS Sequence:
TCTGGCTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
CTTTAAATAAAT
Flanking Amino Acid:
SLVYWIAPSLGTILVAFVWK
Intron Amino Acid Position:
238

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.3
1.11
0.7
90.5
21.5
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
80.5
0.69
0.9
76.7
37.4
Minor 5ss
42.8
-0.8
2.8
59.5
45
Minor BPS
47.4
-0.1
2.1
72.92
43

Associated Gene:

Gene:
AQP11
Ensembl Gene ID:
ENSAPLG00000006765
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007011
199211700 - 199223696
11997