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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_199228825_199230034_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
199228825 - 199230034
Intron Length:
1210

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGACGC
5'SS Class:
major
3'SS Sequence:
GTTTTTTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CACTGAC
U12 Branch Point Sequence:
GTGGCACTGACT
Flanking Amino Acid:
RTEDSIREFEDGMEVDMAPV
Intron Amino Acid Position:
93

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.5
0.67
1
60.8
44.4
Major BPS
61.3
0.28
1
52.7
34.2
Major PPT
92.5
0.96
0.7
88.3
28.9
Minor 5ss
31.9
-2.1
3.1
34.6
41.2
Minor BPS
46.3
-0.2
2
66.02
44.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006540
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006790
199226854 - 199233244
6391