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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_199230414_199230868_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
199230414 - 199230868
Intron Length:
455

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCC|GTAAGTGAA
5'SS Class:
major
3'SS Sequence:
TCTCTTTCCCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CCCACAA
U12 Branch Point Sequence:
GTGCCCACAAGG
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.3
0.48
1.3
68.9
38
Major BPS
47.4
-0.1
1
52.5
32.6
Major PPT
83.3
0.75
0.7
76.5
32.1
Minor 5ss
33.9
-1.8
3.2
44.6
43.6
Minor BPS
42.3
-0.7
2.1
47.2
45.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006540
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006790
199226854 - 199233244
6391