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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_199230977_199233222_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
199230977 - 199233222
Intron Length:
2246

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACGCGCC
5'SS Class:
major
3'SS Sequence:
ACTTTCTCTAAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTGAC
U12 Branch Point Sequence:
GTTTCTCTAACA
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.6
0.67
1
66.4
40.8
Major BPS
72.6
0.56
0.9
63.1
35.8
Major PPT
71.7
0.49
1
71.6
32.7
Minor 5ss
36.5
-1.5
3.5
51
45.8
Minor BPS
70.5
0.64
1.6
81.02
34.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006540
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006790
199226854 - 199233244
6391