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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_199270532_199270823_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
199270532 - 199270823
Intron Length:
292

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACATATT
5'SS Class:
strong_major
3'SS Sequence:
CTCATGTTTCCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
GATGTTTTAACA
Flanking Amino Acid:
SVECKLGILKYLCECQFDDN
Intron Amino Acid Position:
51

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.8
0.73
1
84.4
33.4
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
77.6
0.62
0.9
68.3
42.1
Minor 5ss
39.9
-1.1
3.2
59.8
44.7
Minor BPS
64.8
0.46
1.4
68.52
38

Associated Gene:

Gene:
RSF1
Ensembl Gene ID:
ENSAPLG00000018559
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025024
199242539 - 199274021
31483