Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_199295315_199296637_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

5UTR

Intron Coordinates:

199295315 - 199296637

Intron Length:

1323

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAA|GTAAGGCTG

5'SS Class:

major

3'SS Sequence:

TCCTTTTTTCCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ATTAAAT

U12 Branch Point Sequence:

TAAGCATTAAAT

Flanking Amino Acid:

5UTR

Intron Amino Acid Position:

5UTR

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

78.3

0.67

67.1

Major BPS

73.5

0.58

79.3

29.4

Major PPT

90.3

0.91

0.6

83.6

31.5

Minor 5ss

36.1

-1.6

3.5

47.8

42.2

Minor BPS

55.8

0.26

1.8

73.09

42.8

Associated Gene:

Gene:

AAMDC

Ensembl Gene ID:

ENSAPLG00000006327

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000006556

199294631 - 199301491

6861