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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_199296789_199300111_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
199296789 - 199300111
Intron Length:
3323

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAC|GTGAGTTTG
5'SS Class:
major
3'SS Sequence:
CTCTGACCCTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATATTAT
U12 Branch Point Sequence:
CTACTCTGAATA
Flanking Amino Acid:
TWDWRETGTNHSPGVQPADL
Intron Amino Acid Position:
45

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.7
0.61
1.3
74.8
38.1
Major BPS
75.9
0.64
1
66.1
40.5
Major PPT
70.1
0.45
0.9
66.1
34.8
Minor 5ss
39.7
-1.1
2.9
48.5
41.2
Minor BPS
55.4
0.17
1.4
62.19
38

Associated Gene:

Gene:
AAMDC
Ensembl Gene ID:
ENSAPLG00000006327
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006556
199294631 - 199301491
6861