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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_19929713_19934713_R

Intron Information:

Intron Rank:
138860
Intron Class:
major
Intron Phase:
Intron Coordinates:
19929713 - 19934713
Intron Length:
5001

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTCAC
5'SS Class:
strong_major
3'SS Sequence:
ATTTCTGTCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTAAA
U12 Branch Point Sequence:
CTGCTCTTAAAA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.3
0.95
0.8
77.5
32.9
Major BPS
77.8
0.69
1
78.2
31.8
Major PPT
73.5
0.53
0.9
66.1
40.2
Minor 5ss
29.1
-2.4
2.8
34.7
41.7
Minor BPS
60.9
0.34
1.5
65.53
40.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022201
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046801
19916980 - 19934835
17856