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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_199362951_199363052_R

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
199362951 - 199363052
Intron Length:
102

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
GGG|GCTGGGGTG
5'SS Class:
major
3'SS Sequence:
GGGGAAGGGGGAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TGGGGAA
U12 Branch Point Sequence:
CGTTGGGGAAGG
Flanking Amino Acid:
LLTAGRGRGKGEGLG
Intron Amino Acid Position:
60

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
60.8
0.26
1.4
59.5
42.7
Major BPS
42.9
-0.4
1.5
34.8
43.8
Major PPT
35.9
-0.8
1.6
20.2
36.3
Minor 5ss
17
-3.8
4
21
37.8
Minor BPS
29.4
-1.7
2.7
35.99
45.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027987
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041397
199362938 - 199363280
343