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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_199367433_199368644_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
199367433 - 199368644
Intron Length:
1212

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTGAA
5'SS Class:
strong_major
3'SS Sequence:
TGTCATTTTTTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTCAT
U12 Branch Point Sequence:
AATTGGTTAACA
Flanking Amino Acid:
KAILLAILPLSLLSVQRTKD
Intron Amino Acid Position:
439

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92
0.99
0.7
82.8
23.2
Major BPS
84.8
0.86
1.1
85.7
34.9
Major PPT
79.5
0.66
0.8
77.4
36.6
Minor 5ss
26.6
-2.7
3
30.8
43.1
Minor BPS
52.8
0.08
2.4
70.9
41.2

Associated Gene:

Gene:
ALG8
Ensembl Gene ID:
ENSAPLG00000005720
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005944
199364671 - 199375685
11015