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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_199369233_199369518_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
199369233 - 199369518
Intron Length:
286

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTACAGCAT
5'SS Class:
major
3'SS Sequence:
CTTCTTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
ACGTCTTTAATC
Flanking Amino Acid:
NAVDKALTVVGLKYNFLDPT
Intron Amino Acid Position:
346

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
62.8
0.3
1.1
55.7
42.8
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
92.7
0.96
0.6
91.6
19.6
Minor 5ss
30.8
-2.2
3.6
43.6
46
Minor BPS
70
0.61
1.2
67.96
38.5

Associated Gene:

Gene:
ALG8
Ensembl Gene ID:
ENSAPLG00000005720
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005944
199364671 - 199375685
11015