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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_199369861_199370840_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
199369861 - 199370840
Intron Length:
980

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGATGG
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTCTTATAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTAAT
U12 Branch Point Sequence:
TTCTTCTTATAG
Flanking Amino Acid:
RSYCFTANNADGSLKWRSFS
Intron Amino Acid Position:
271

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.1
0.92
0.9
72.5
39.9
Major BPS
84.4
0.85
1
84
34.5
Major PPT
88.5
0.87
0.6
84.4
23.6
Minor 5ss
37.3
-1.4
3
47.6
47.9
Minor BPS
56.7
0.07
1.8
63.88
44.1

Associated Gene:

Gene:
ALG8
Ensembl Gene ID:
ENSAPLG00000005720
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005944
199364671 - 199375685
11015