Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_199371593_199372461_R

Intron Information:

Intron Rank:

Intron Class:

minor

Intron Phase:

Intron Coordinates:

199371593 - 199372461

Intron Length:

869

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATC|GTATCCTTT

5'SS Class:

strong_minor

3'SS Sequence:

GACTCAAGTTCAG|A

3'SS Class:

minor_BPS

U2 Branch Point Sequence:

ATTTGAT

U12 Branch Point Sequence:

CCTTTCTTGACT

Flanking Amino Acid:

LWNFGLLIVDHIHFQYNGFL

Intron Amino Acid Position:

206

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

48.5

-0

1.4

44.6

Major BPS

87.6

0.93

0.8

77.4

37.3

Major PPT

60.4

0.24

1.1

55.6

43.4

Minor 5ss

95.1

1.52

0.8

90.6

Minor BPS

0.87

1.2

82.19

39.8

Associated Gene:

Gene:

ALG8

Ensembl Gene ID:

ENSAPLG00000005720

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000005944

199364671 - 199375685

11015