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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_199372572_199373628_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
199372572 - 199373628
Intron Length:
1057

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGA|GTAAGTCTT
5'SS Class:
major
3'SS Sequence:
TGTTGTTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAA
U12 Branch Point Sequence:
TTTCAATTAAGA
Flanking Amino Acid:
TDILFIYAVHECCRCVNGKR
Intron Amino Acid Position:
169

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.4
0.65
1
75.5
40.6
Major BPS
82
0.79
0.8
83.7
25.7
Major PPT
87
0.83
0.8
84.6
36
Minor 5ss
41.4
-1
3.1
55.9
42.3
Minor BPS
51.3
0.04
2.1
71.45
40

Associated Gene:

Gene:
ALG8
Ensembl Gene ID:
ENSAPLG00000005720
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005944
199364671 - 199375685
11015