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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_199374850_199375452_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
199374850 - 199375452
Intron Length:
603

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTA|GTAAGAAAG
5'SS Class:
major
3'SS Sequence:
AAACCTTTTGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTAACAT
U12 Branch Point Sequence:
TCTGACTTAACA
Flanking Amino Acid:
SFLKCLLIPTYHSTDFEVHR
Intron Amino Acid Position:
78

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.4
0.55
1
67.1
38.1
Major BPS
71
0.52
1.1
77.7
35.3
Major PPT
73
0.52
0.9
66
39.7
Minor 5ss
34.7
-1.7
3
42.2
39.5
Minor BPS
68.6
0.58
1.6
76.13
41.2

Associated Gene:

Gene:
ALG8
Ensembl Gene ID:
ENSAPLG00000005720
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005944
199364671 - 199375685
11015