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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_199398008_199402598_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
199398008 - 199402598
Intron Length:
4591

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGAGAA
5'SS Class:
strong_major
3'SS Sequence:
GATTTCATTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TTGGATTTCATT
Flanking Amino Acid:
SDVQMMMAIGRMIDWVSWPL
Intron Amino Acid Position:
269

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.5
0.74
1
71.3
34.5
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
78.7
0.65
0.9
74.8
39.5
Minor 5ss
28.3
-2.5
3.5
37.3
47.4
Minor BPS
47.3
-0.1
2
67.86
43.9

Associated Gene:

Gene:
USP35
Ensembl Gene ID:
ENSAPLG00000005646
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005844
199396177 - 199410938
14762