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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_199404202_199405969_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
199404202 - 199405969
Intron Length:
1768

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGGATG
5'SS Class:
strong_major
3'SS Sequence:
TTTTGTTTTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTTATTTTATAT
Flanking Amino Acid:
FQHSHEAFHLLLPHIPRLVA
Intron Amino Acid Position:
347

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.4
0.79
0.9
75.2
40.6
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
91.8
0.94
0.7
84.6
36
Minor 5ss
36
-1.6
3.3
45.6
43.8
Minor BPS
56.4
0.28
1.7
77.34
39.2

Associated Gene:

Gene:
USP35
Ensembl Gene ID:
ENSAPLG00000005646
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005844
199396177 - 199410938
14762