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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_199406771_199406888_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
199406771 - 199406888
Intron Length:
118

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGA|GTGAGTTTT
5'SS Class:
major
3'SS Sequence:
TTTTCTTTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTCCAT
U12 Branch Point Sequence:
TTTTCTTTTGCA
Flanking Amino Acid:
SIIQSLFMASDFRHSVLNLT
Intron Amino Acid Position:
464

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75
0.59
1
77.7
33.3
Major BPS
77.3
0.68
1.2
86.7
32.3
Major PPT
95.8
1.03
0.5
92.1
18.3
Minor 5ss
42
-0.9
3
54.7
43.6
Minor BPS
47
-0.2
3.6
78.96
37.6

Associated Gene:

Gene:
USP35
Ensembl Gene ID:
ENSAPLG00000005646
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005844
199396177 - 199410938
14762