About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_199406983_199408452_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
199406983 - 199408452
Intron Length:
1470

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATTATT
5'SS Class:
strong_major
3'SS Sequence:
CTCTTGGTGCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAAACAT
U12 Branch Point Sequence:
ATGGCTTAAACA
Flanking Amino Acid:
WLFAFLEHSQRPAISPESFL
Intron Amino Acid Position:
496

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.7
0.94
0.8
92.8
22.7
Major BPS
63.2
0.33
1.1
69.6
35.7
Major PPT
67.4
0.39
1.1
60.5
44.8
Minor 5ss
41.7
-0.9
2.9
60.3
44.1
Minor BPS
54.9
0.15
1.8
64.88
42.2

Associated Gene:

Gene:
USP35
Ensembl Gene ID:
ENSAPLG00000005646
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005844
199396177 - 199410938
14762