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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_199425092_199426271_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
199425092 - 199426271
Intron Length:
1180

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAATTTG
5'SS Class:
strong_major
3'SS Sequence:
GGTTGTGTTGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AGTGGAT
U12 Branch Point Sequence:
TGCTCTGGGACA
Flanking Amino Acid:
PAVENSRLHRASSCETYDYP
Intron Amino Acid Position:
364

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
0.9
77.2
33.9
Major BPS
49
-0
1.5
48.8
46.3
Major PPT
72.8
0.51
1
65.2
45.5
Minor 5ss
37.7
-1.4
3
48.7
47.5
Minor BPS
45.8
-0.3
2.1
59.33
40.8

Associated Gene:

Gene:
GAB2
Ensembl Gene ID:
ENSAPLG00000005487
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005672
199419104 - 199448251
29148