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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_199510551_199511163_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
199510551 - 199511163
Intron Length:
613

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTGAGTCCA
5'SS Class:
major
3'SS Sequence:
TGTTTCTTTTAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTGAC
U12 Branch Point Sequence:
GTTTCTTTTAAG
Flanking Amino Acid:
RDNEDGPQRTVAAVDLLVPG
Intron Amino Acid Position:
410

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.6
0.49
1
61.7
38.7
Major BPS
64.8
0.37
0.9
55.1
32.8
Major PPT
79.1
0.65
1
83.4
32
Minor 5ss
31.3
-2.1
2.8
39.3
39.7
Minor BPS
56.9
0.07
1.8
65.37
42.1

Associated Gene:

Gene:
NARS2
Ensembl Gene ID:
ENSAPLG00000005256
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036395
199501466 - 199546662
45197
ENSAPLT00000030265
199501730 - 199546662
44933
ENSAPLT00000005471
199501815 - 199546662
44848