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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_199519255_199529452_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
199519255 - 199529452
Intron Length:
10198

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTGAGTGAA
5'SS Class:
strong_major
3'SS Sequence:
TGTCTCCTCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACCTCAT
U12 Branch Point Sequence:
TGGGCTTGACCT
Flanking Amino Acid:
SGQLHLEVMAGAFTHVFTFG
Intron Amino Acid Position:
251

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.4
0.76
0.9
73.7
32.5
Major BPS
73.5
0.58
1
73.6
32.5
Major PPT
78.9
0.65
0.8
73.3
31.6
Minor 5ss
26.1
-2.7
2.9
22.6
37.5
Minor BPS
47.9
-0
1.8
65
45.6

Associated Gene:

Gene:
NARS2
Ensembl Gene ID:
ENSAPLG00000005256
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036395
199501466 - 199546662
45197
ENSAPLT00000030265
199501730 - 199546662
44933
ENSAPLT00000005471
199501815 - 199546662
44848