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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_199550821_199551514_F

Intron Information:

Intron Rank:
150342
Intron Class:
major
Intron Phase:
Intron Coordinates:
199550821 - 199551514
Intron Length:
694

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTGAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TCTCTTCCCCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTGAC
U12 Branch Point Sequence:
CCTTCCTGACCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.9
0.8
0.9
79.3
31.1
Major BPS
68.9
0.47
1
59.2
39.1
Major PPT
80.7
0.69
0.7
73.2
31.8
Minor 5ss
29.2
-2.4
2.5
25
36.8
Minor BPS
60.2
0.4
1.8
76.42
46.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030804
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034523
199549957 - 199554595
4639