About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_199551616_199553208_F

Intron Information:

Intron Rank:
150343
Intron Class:
major
Intron Phase:
Intron Coordinates:
199551616 - 199553208
Intron Length:
1593

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGGGTTTC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTACTCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
TTTTTTTTACTC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.5
0.79
0.9
78.3
32.5
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
86.1
0.81
0.7
81
29.9
Minor 5ss
37.9
-1.4
3.2
51.5
45.7
Minor BPS
67
0.51
1.5
77
33.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030804
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034523
199549957 - 199554595
4639