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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_199617052_199625517_R

Intron Information:

Intron Rank:
28
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
199617052 - 199625517
Intron Length:
8466

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGATCCAT
5'SS Class:
major
3'SS Sequence:
TCTCTGTTCGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAC
U12 Branch Point Sequence:
TCTAACATATCT
Flanking Amino Acid:
MKTQEWDNSKSILGVQCEVQ
Intron Amino Acid Position:
2468

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.7
0.58
1
66.8
40.2
Major BPS
84.6
0.86
0.8
83.9
22.3
Major PPT
80.8
0.69
0.8
75.8
32.6
Minor 5ss
34.2
-1.8
3.2
47.3
48.1
Minor BPS
47.5
-0.1
2.1
70.92
45.3

Associated Gene:

Gene:
TENM4
Ensembl Gene ID:
ENSAPLG00000004223
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027228
199616293 - 200105239
488947
ENSAPLT00000048225
199616293 - 199999435
383143
ENSAPLT00000019353
199616293 - 199999435
383143
ENSAPLT00000045238
199616293 - 199999435
383143
ENSAPLT00000004388
199616293 - 200105239
488947
ENSAPLT00000040747
199616293 - 200105239
488947
ENSAPLT00000031543
199616293 - 199834006
217714