About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_199625661_199630179_R

Intron Information:

Intron Rank:
27
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
199625661 - 199630179
Intron Length:
4519

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGACAT
5'SS Class:
strong_major
3'SS Sequence:
TCTTCCTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTGAT
U12 Branch Point Sequence:
ATAATCTGATTT
Flanking Amino Acid:
NSQDIKCYMTDVNSWLLTFG
Intron Amino Acid Position:
2420

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.1
0.97
0.8
80.7
33.7
Major BPS
82.5
0.81
0.8
71.4
36.6
Major PPT
88.4
0.86
0.7
80.6
31.4
Minor 5ss
33.6
-1.9
3.2
47.4
48
Minor BPS
47.9
-0
1.7
64.72
39.7

Associated Gene:

Gene:
TENM4
Ensembl Gene ID:
ENSAPLG00000004223
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004388
199616293 - 200105239
488947
ENSAPLT00000040747
199616293 - 200105239
488947
ENSAPLT00000031543
199616293 - 199834006
217714
ENSAPLT00000027228
199616293 - 200105239
488947
ENSAPLT00000048225
199616293 - 199999435
383143
ENSAPLT00000019353
199616293 - 199999435
383143
ENSAPLT00000045238
199616293 - 199999435
383143