About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_199631795_199633033_R

Intron Information:

Intron Rank:
26
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
199631795 - 199633033
Intron Length:
1239

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGGGAGTC
5'SS Class:
major
3'SS Sequence:
CTTCCCCACCTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTTAT
U12 Branch Point Sequence:
TCTTCCCCACCT
Flanking Amino Acid:
KSWSYTYLEKSMVLLLHSQR
Intron Amino Acid Position:
1882

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.8
0.66
1
69.4
35.7
Major BPS
74.8
0.62
0.9
63.7
35.1
Major PPT
66.5
0.37
0.8
58.8
31.8
Minor 5ss
28.2
-2.5
3.6
40.3
46.1
Minor BPS
49.9
0.07
2.2
76.94
45.3

Associated Gene:

Gene:
TENM4
Ensembl Gene ID:
ENSAPLG00000004223
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031543
199616293 - 199834006
217714
ENSAPLT00000027228
199616293 - 200105239
488947
ENSAPLT00000048225
199616293 - 199999435
383143
ENSAPLT00000019353
199616293 - 199999435
383143
ENSAPLT00000045238
199616293 - 199999435
383143
ENSAPLT00000004388
199616293 - 200105239
488947
ENSAPLT00000040747
199616293 - 200105239
488947