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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_199659307_199667919_R

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
199659307 - 199667919
Intron Length:
8613

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTGAGACTT
5'SS Class:
major
3'SS Sequence:
TTTTCTTCCCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAC
U12 Branch Point Sequence:
TCCTTTCTGACT
Flanking Amino Acid:
GTDATLTNPRGITVDKFGLI
Intron Amino Acid Position:
1302

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.4
0.67
1
71.5
40.2
Major BPS
81.4
0.78
0.9
71.3
36.7
Major PPT
87.5
0.84
0.7
81.1
30.9
Minor 5ss
32
-2.1
3.3
40.2
45.4
Minor BPS
53.2
0.18
1.7
70.58
41.1

Associated Gene:

Gene:
TENM4
Ensembl Gene ID:
ENSAPLG00000004223
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027228
199616293 - 200105239
488947
ENSAPLT00000048225
199616293 - 199999435
383143
ENSAPLT00000019353
199616293 - 199999435
383143
ENSAPLT00000045238
199616293 - 199999435
383143
ENSAPLT00000004388
199616293 - 200105239
488947
ENSAPLT00000040747
199616293 - 200105239
488947
ENSAPLT00000031543
199616293 - 199834006
217714