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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_199668153_199677986_R

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
199668153 - 199677986
Intron Length:
9834

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACACTGT
5'SS Class:
major
3'SS Sequence:
CCTTGTTTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATAAT
U12 Branch Point Sequence:
ATAATAATAATA
Flanking Amino Acid:
SGNVTNILELSHSPAHKYYL
Intron Amino Acid Position:
1224

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.6
0.49
1.1
63.2
43.9
Major BPS
80
0.75
1
78.6
31
Major PPT
86.1
0.81
0.8
83.6
31.4
Minor 5ss
43.9
-0.7
3.3
65.1
46.1
Minor BPS
46
-0.3
1.8
57.6
35

Associated Gene:

Gene:
TENM4
Ensembl Gene ID:
ENSAPLG00000004223
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004388
199616293 - 200105239
488947
ENSAPLT00000040747
199616293 - 200105239
488947
ENSAPLT00000031543
199616293 - 199834006
217714
ENSAPLT00000027228
199616293 - 200105239
488947
ENSAPLT00000048225
199616293 - 199999435
383143
ENSAPLT00000019353
199616293 - 199999435
383143
ENSAPLT00000045238
199616293 - 199999435
383143