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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_199708108_199723492_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
199708108 - 199723492
Intron Length:
15385

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGACGG
5'SS Class:
major
3'SS Sequence:
TATCCTTCTGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
TCTTTCTTATCC
Flanking Amino Acid:
ACGDGKDNDGDGLVDCMDPD
Intron Amino Acid Position:
804

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.2
0.64
1.1
57.3
47.4
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
78.7
0.65
0.8
74
30.7
Minor 5ss
30
-2.3
3.3
38.8
46.3
Minor BPS
70.4
0.62
1.6
77.51
38.8

Associated Gene:

Gene:
TENM4
Ensembl Gene ID:
ENSAPLG00000004223
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031543
199616293 - 199834006
217714
ENSAPLT00000048225
199616293 - 199999435
383143
ENSAPLT00000027228
199616293 - 200105239
488947
ENSAPLT00000045238
199616293 - 199999435
383143
ENSAPLT00000019353
199616293 - 199999435
383143
ENSAPLT00000040747
199616293 - 200105239
488947
ENSAPLT00000004388
199616293 - 200105239
488947