Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_199759953_199764623_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

199759953 - 199764623

Intron Length:

4671

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAGGAATT

5'SS Class:

strong_major

3'SS Sequence:

TGTCTTTCCCCAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTAAT

U12 Branch Point Sequence:

TGGTTTTTAATG

Flanking Amino Acid:

LGFLGPDCGRASCPVLCSGN

Intron Amino Acid Position:

561

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

85.1

0.83

0.9

84.6

33.3

Major BPS

99.5

1.23

0.5

98.2

4.2

Major PPT

80.6

0.69

0.8

73.1

37.3

Minor 5ss

-1.4

3.4

57.1

47.2

Minor BPS

65.3

0.34

1.3

62.99

39.9

Associated Gene:

Gene:

TENM4

Ensembl Gene ID:

ENSAPLG00000004223

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000040747

199616293 - 200105239

488947

ENSAPLT00000031543

199616293 - 199834006

217714

ENSAPLT00000027228

199616293 - 200105239

488947

ENSAPLT00000048225

199616293 - 199999435

383143

ENSAPLT00000004388

199616293 - 200105239

488947

ENSAPLT00000045238

199616293 - 199999435

383143