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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_199812557_199819928_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
199812557 - 199819928
Intron Length:
7372

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGTCAC
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTCCCTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GAATCAC
U12 Branch Point Sequence:
GTGTGAGGAATC
Flanking Amino Acid:
LLNSNIPLETRHFLFKPGGT
Intron Amino Acid Position:
249

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.6
1.05
0.7
81.4
32.7
Major BPS
52.8
0.07
1.2
57.7
39
Major PPT
86.3
0.82
0.6
85.2
22.3
Minor 5ss
34.5
-1.8
2.9
43.8
43.9
Minor BPS
37.3
-0.9
2.4
48.87
41.3

Associated Gene:

Gene:
TENM4
Ensembl Gene ID:
ENSAPLG00000004223
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004388
199616293 - 200105239
488947