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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_199820182_199833891_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
199820182 - 199833891
Intron Length:
13710

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACAAAGA
5'SS Class:
major
3'SS Sequence:
ACTTCTGTTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAC
U12 Branch Point Sequence:
TGGACCTTAAAA
Flanking Amino Acid:
PNLFPVPRRPDHPPNLQNHS
Intron Amino Acid Position:
39

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.2
0.52
1.1
65.2
40.7
Major BPS
81.3
0.78
0.8
83.4
26.1
Major PPT
75.9
0.58
0.9
73.5
36.4
Minor 5ss
31.1
-2.2
3.2
40.8
45
Minor BPS
66.6
0.52
1.5
70.67
40.8

Associated Gene:

Gene:
TENM4
Ensembl Gene ID:
ENSAPLG00000004223
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031543
199616293 - 199834006
217714