Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_199820182_199941359_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

199820182 - 199941359

Intron Length:

121178

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CTG|GTAAGTGCC

5'SS Class:

strong_major

3'SS Sequence:

ACTTCTGTTTTAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ATTTCAC

U12 Branch Point Sequence:

TGGACCTTAAAA

Flanking Amino Acid:

TDTEHENTETDHPPNLQNHS

Intron Amino Acid Position:

165

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

87.2

0.88

0.9

34.9

Major BPS

81.3

0.78

0.8

83.4

26.1

Major PPT

75.9

0.58

0.9

73.5

36.4

Minor 5ss

34.1

-1.8

3.1

41.9

38.9

Minor BPS

66.6

0.52

1.5

70.67

40.8

Associated Gene:

Gene:

TENM4

Ensembl Gene ID:

ENSAPLG00000004223

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000027228

199616293 - 200105239

488947

ENSAPLT00000019353

199616293 - 199999435

383143

ENSAPLT00000048225

199616293 - 199999435

383143

ENSAPLT00000004388

199616293 - 200105239

488947

ENSAPLT00000045238

199616293 - 199999435

383143

ENSAPLT00000040747

199616293 - 200105239

488947