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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_199941630_199946092_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
199941630 - 199946092
Intron Length:
4463

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCACA
5'SS Class:
strong_major
3'SS Sequence:
TGTTTTCTCCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAA
U12 Branch Point Sequence:
TAAAGAGTAACC
Flanking Amino Acid:
HQEADEFCRAGANFSLRELG
Intron Amino Acid Position:
75

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86
0.85
0.9
76.7
33.9
Major BPS
82.6
0.81
0.8
82.2
24.5
Major PPT
84.5
0.78
0.8
77.2
37.1
Minor 5ss
34.2
-1.8
2.8
40.7
45.3
Minor BPS
41
-0.7
2.4
54.62
42.7

Associated Gene:

Gene:
TENM4
Ensembl Gene ID:
ENSAPLG00000004223
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045238
199616293 - 199999435
383143
ENSAPLT00000040747
199616293 - 200105239
488947
ENSAPLT00000019353
199616293 - 199999435
383143
ENSAPLT00000004388
199616293 - 200105239
488947
ENSAPLT00000048225
199616293 - 199999435
383143