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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_199946382_199981974_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
199946382 - 199981974
Intron Length:
35593

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGTGGT
5'SS Class:
strong_major
3'SS Sequence:
TTCTCTCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTCAT
U12 Branch Point Sequence:
ATTTCTTTCATT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.9
0.89
0.9
77.9
36.8
Major BPS
87.6
0.93
0.9
89.3
26
Major PPT
90
0.9
0.6
88.4
21.2
Minor 5ss
34.5
-1.8
3.3
46.4
44.2
Minor BPS
69.2
0.69
1.7
85.82
34.8

Associated Gene:

Gene:
TENM4
Ensembl Gene ID:
ENSAPLG00000004223
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019353
199616293 - 199999435
383143
ENSAPLT00000048225
199616293 - 199999435
383143
ENSAPLT00000045238
199616293 - 199999435
383143