About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_199999436_200105096_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
199999436 - 200105096
Intron Length:
105661

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAT|GTAAGTACA
5'SS Class:
strong_major
3'SS Sequence:
TGTCTTTTGACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTAACAA
U12 Branch Point Sequence:
TGTCTTTTGACA
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.1
0.83
1
82.7
29.2
Major BPS
61.8
0.29
1.1
69.7
35.6
Major PPT
78.9
0.65
1
75.8
38.2
Minor 5ss
38.4
-1.3
2.7
48.5
40.3
Minor BPS
65.7
0.49
1.2
72
33.3

Associated Gene:

Gene:
TENM4
Ensembl Gene ID:
ENSAPLG00000004223
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040747
199616293 - 200105239
488947
ENSAPLT00000027228
199616293 - 200105239
488947
ENSAPLT00000004388
199616293 - 200105239
488947