Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_20038454_20040224_R

Intron Information:

Intron Rank:

131751

Intron Class:

major

Intron Phase:

Intron Coordinates:

20038454 - 20040224

Intron Length:

1771

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CGG|GTAAATATG

5'SS Class:

major

3'SS Sequence:

TTTTTTTTTTTAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TCCTAAA

U12 Branch Point Sequence:

CATCCTAAATCT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

78.4

0.67

75.1

41.1

Major BPS

72.7

0.57

72.1

31.1

Major PPT

95.8

1.03

0.5

96.6

11.7

Minor 5ss

38.3

-1.3

2.9

42.6

44.4

Minor BPS

-0.5

59.19

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000018091

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000032121

20037181 - 20042343

5163