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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_20042344_20056226_R

Intron Information:

Intron Rank:
131757
Intron Class:
major
Intron Phase:
Intron Coordinates:
20042344 - 20056226
Intron Length:
13883

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGGAT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTAAC
U12 Branch Point Sequence:
CTCTCCATCAGT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91
0.97
0.8
82.1
31
Major BPS
72.3
0.55
1
73.3
28.9
Major PPT
97.3
1.06
0.5
96.6
11.5
Minor 5ss
30.9
-2.2
3.6
45.9
49.3
Minor BPS
46.7
-0.1
2.3
68.14
48.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018091
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040851
20040160 - 20067628
27469