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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_20048523_20056226_R

Intron Information:

Intron Rank:
131759
Intron Class:
major
Intron Phase:
Intron Coordinates:
20048523 - 20056226
Intron Length:
7704

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGGAT
5'SS Class:
strong_major
3'SS Sequence:
TCCTTTGTCCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATCAT
U12 Branch Point Sequence:
TTTTGTATAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91
0.97
0.8
82.1
31
Major BPS
88.2
0.95
0.9
88.3
28.5
Major PPT
74.8
0.56
0.8
68.4
37.4
Minor 5ss
30.9
-2.2
3.6
45.9
49.3
Minor BPS
60
0.39
2
84.42
36.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018091
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040901
20048369 - 20056454
8086