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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_200810771_200810895_R

Intron Information:

Intron Rank:
144522
Intron Class:
major
Intron Phase:
Intron Coordinates:
200810771 - 200810895
Intron Length:
125

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGAATTCT
5'SS Class:
strong_major
3'SS Sequence:
GCACATTCTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
TGCTTATTAATC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.5
0.79
0.9
79.9
28.5
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
70.1
0.45
0.9
65.6
40.5
Minor 5ss
36.7
-1.5
3
50.4
46
Minor BPS
61
0.32
1.6
67.66
38.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025081
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031542
200810578 - 200811899
1322