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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_200810986_200811147_R

Intron Information:

Intron Rank:
144523
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
200810986 - 200811147
Intron Length:
162

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTATTTCTA
5'SS Class:
major
3'SS Sequence:
CCTGCGCTCTGAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
GATTTCTGATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.9
0.66
1
72.5
38.4
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
48.8
-0
1.7
57
38.7
Minor 5ss
44
-0.7
2.8
59
45.4
Minor BPS
53
0.17
1.7
70.58
40.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025081
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031542
200810578 - 200811899
1322