Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_20101674_20102073_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

20101674 - 20102073

Intron Length:

400

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAACACA

5'SS Class:

strong_major

3'SS Sequence:

CCCCTAATATCAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ATCTAAA

U12 Branch Point Sequence:

TACATCTAAAAA

Flanking Amino Acid:

KCPFAHGEFPAWKMRTAAVA

Intron Amino Acid Position:

362

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.9

0.73

36.5

Major BPS

76.5

0.66

0.8

75.9

24.9

Major PPT

65.4

0.35

Minor 5ss

-1.2

2.9

49.8

46.2

Minor BPS

48.4

-0.1

1.8

58.01

41.3

Associated Gene:

Gene:

IL17REL

Ensembl Gene ID:

ENSAPLG00000016050

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000016750

20094523 - 20159398

64876

ENSAPLT00000020676

20095120 - 20143305

48186

ENSAPLT00000016751

20094523 - 20162705

68183