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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_20102132_20103360_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20102132 - 20103360
Intron Length:
1229

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACAGTGA
5'SS Class:
major
3'SS Sequence:
TCTCTGGTTTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAA
U12 Branch Point Sequence:
TTTTCCTAACCA
Flanking Amino Acid:
VDTHPRLCMKFTTKQGSWVK
Intron Amino Acid Position:
343

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.1
0.47
1.1
60.1
41.3
Major BPS
81.6
0.78
0.8
82
24.9
Major PPT
79.4
0.66
0.9
76.2
37.8
Minor 5ss
34.4
-1.8
3.5
47.2
48.2
Minor BPS
67.3
0.54
1.9
83.03
38.2

Associated Gene:

Gene:
IL17REL
Ensembl Gene ID:
ENSAPLG00000016050
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020676
20095120 - 20143305
48186
ENSAPLT00000016751
20094523 - 20162705
68183
ENSAPLT00000016750
20094523 - 20159398
64876