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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_20105940_20107694_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
20105940 - 20107694
Intron Length:
1755

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
ATG|GCAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
CTTTTTCTCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
ACATTTTGAACA
Flanking Amino Acid:
RRIQLCPFENDTKVLWDNIV
Intron Amino Acid Position:
273

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.1
0.88
1
92.3
24.3
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
88
0.86
0.6
83.5
24.8
Minor 5ss
31.5
-2.1
4
48.3
41.8
Minor BPS
58
0.25
1.4
62.85
37.4

Associated Gene:

Gene:
IL17REL
Ensembl Gene ID:
ENSAPLG00000016050
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020676
20095120 - 20143305
48186
ENSAPLT00000016751
20094523 - 20162705
68183
ENSAPLT00000016750
20094523 - 20159398
64876