Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_201080108_201081030_F

Intron Information:

Intron Rank:

149100

Intron Class:

major

Intron Phase:

Intron Coordinates:

201080108 - 201081030

Intron Length:

923

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATG|GTAAGTGGA

5'SS Class:

strong_major

3'SS Sequence:

TTCCTTCTCAAAG|T

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TACTCAA

U12 Branch Point Sequence:

TCCTTCTCAAAG

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

86.9

0.87

0.9

74.2

36.5

Major BPS

77.9

0.69

0.8

77.9

25.8

Major PPT

72.5

0.51

28.5

Minor 5ss

32.2

-2

3.1

37.6

42.2

Minor BPS

51.3

-0.1

1.8

56.14

45.3

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000030167

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000026445

201078821 - 201081186

2366