About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_20109703_20109865_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20109703 - 20109865
Intron Length:
163

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTGAGTTAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCATTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TCTTTTTCATTT
Flanking Amino Acid:
TCEDVGQFAVIKGKDTLKSV
Intron Amino Acid Position:
231

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.9
0.82
0.8
78.1
26.4
Major BPS
100
1.24
0.5
100
0
Major PPT
91.5
0.93
0.7
89.9
24.7
Minor 5ss
34.2
-1.8
2.8
36.8
41.9
Minor BPS
50.8
0.1
1.8
70.88
41.3

Associated Gene:

Gene:
IL17REL
Ensembl Gene ID:
ENSAPLG00000016050
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020676
20095120 - 20143305
48186
ENSAPLT00000016751
20094523 - 20162705
68183
ENSAPLT00000016750
20094523 - 20159398
64876