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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_20118006_20124065_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
20118006 - 20124065
Intron Length:
6060

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCA|GTGAGTATA
5'SS Class:
major
3'SS Sequence:
TTTACATTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTACAT
U12 Branch Point Sequence:
TGTGTTTTACAT
Flanking Amino Acid:
QGVHCKSKPSSDIFNSFCHD
Intron Amino Acid Position:
44

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.2
0.6
1
77.2
32.8
Major BPS
82.7
0.81
0.9
89.3
26.1
Major PPT
83.7
0.76
0.8
77.7
35.4
Minor 5ss
36.1
-1.6
2.9
47.9
41.8
Minor BPS
49.3
0.03
1.8
68.86
42.4

Associated Gene:

Gene:
IL17REL
Ensembl Gene ID:
ENSAPLG00000016050
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020676
20095120 - 20143305
48186
ENSAPLT00000016751
20094523 - 20162705
68183
ENSAPLT00000016750
20094523 - 20159398
64876