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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_20124094_20143068_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20124094 - 20143068
Intron Length:
18975

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATCTCT
5'SS Class:
strong_major
3'SS Sequence:
TTTCTGTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTAAT
U12 Branch Point Sequence:
GCTTTTGTAATA
Flanking Amino Acid:
IEECGLSCSQGVHCKSKPSS
Intron Amino Acid Position:
35

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.2
0.71
1
74.3
37
Major BPS
84.4
0.85
1.1
84
34.5
Major PPT
89.1
0.88
0.7
84.2
30.7
Minor 5ss
46.6
-0.4
2.8
66.3
44.7
Minor BPS
50.3
0.01
2
62.57
38.8

Associated Gene:

Gene:
IL17REL
Ensembl Gene ID:
ENSAPLG00000016050
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020676
20095120 - 20143305
48186
ENSAPLT00000016751
20094523 - 20162705
68183
ENSAPLT00000016750
20094523 - 20159398
64876