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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_201325620_201325864_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
201325620 - 201325864
Intron Length:
245

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGGGTGGC
5'SS Class:
strong_major
3'SS Sequence:
TTTTGTCTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CCCCCAG
U12 Branch Point Sequence:
GCCCCCCCAGCC
Flanking Amino Acid:
SSGHYGHQYGAPGVTHVIVR
Intron Amino Acid Position:
159

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.1
0.71
1
67.2
38.1
Major BPS
39.5
-0.6
1.5
43.7
39.4
Major PPT
90
0.9
0.7
84.9
29.9
Minor 5ss
26.2
-2.7
3.2
34.3
42
Minor BPS
40.6
-0.7
1.9
45.87
42.3

Associated Gene:

Gene:
PLEKHB1
Ensembl Gene ID:
ENSAPLG00000030939
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045721
201320515 - 201326001
5487